Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| TGCT | rs10847691 | chr12:129287449 | G/A | 1.54E-5 | 133 | 40.57 | 44.28 | 29.53 | KM Plot |
| TGCT | rs10847692 | chr12:129289679 | A/T | 1.39E-5 | 134 | 41.33 | 44.28 | 29.53 | KM Plot |
| TGCT | rs10847695 | chr12:129297096 | C/T | 1.39E-5 | 134 | 41.33 | 44.28 | 29.53 | KM Plot |
| TGCT | rs10847696 | chr12:129297153 | G/A | 1.39E-5 | 134 | 41.33 | 44.28 | 29.53 | KM Plot |
| TGCT | rs10847697 | chr12:129299385 | C/T | 1.39E-5 | 134 | 41.33 | 44.28 | 29.53 | KM Plot |
| TGCT | rs10847698 | chr12:129300222 | T/C | 1.39E-5 | 134 | 41.33 | 44.28 | 29.53 | KM Plot |
| TGCT | rs10848063 | chr12:130765144 | A/G | 2.77E-5 | 134 | 46.77 | 31.03 | 34.7 | KM Plot |
| TGCT | rs10861642 | chr12:107043303 | C/T | 3.53E-8 | 132 | 48.87 | 45.1 | 27.93 | KM Plot |
| TGCT | rs10861645 | chr12:107071130 | C/T | 5.07E-5 | 134 | 46.77 | 45.1 | 28.67 | KM Plot |
| TGCT | rs10861646 | chr12:107071182 | C/T | 5.07E-5 | 134 | 46.77 | 45.1 | 28.67 | KM Plot |
| TGCT | rs10861650 | chr12:107097836 | A/C | 5.07E-5 | 134 | 46.77 | 45.1 | 28.67 | KM Plot |
| TGCT | rs10861654 | chr12:107122896 | A/G | 0.000124 | 132 | 42.27 | 41.65 | 28.8 | KM Plot |
| TGCT | rs10861657 | chr12:107131314 | A/G | 0.000113 | 133 | 42.27 | 45.1 | 28.8 | KM Plot |
| TGCT | rs10861658 | chr12:107134566 | A/C | 1.63E-7 | 134 | 24.27 | 49.93 | 40.57 | KM Plot |
| TGCT | rs10861659 | chr12:107147542 | T/C | 3.98E-12 | 134 | 41.97 | 49.93 | 24.27 | KM Plot |